Fine‐scale Population Genetic Structure of Two Dioecious Indian Keystone Species,Ficus hispida and Ficus exasperata (Moraceae)

Although Ficus (Moraceae) is a keystone plant genus in the tropics, providing resources to many frugivorous vertebrates, its population genetic structure, which is an important determinant of its long‐term survival, has rarely been investigated. We examined the population genetic structure of two dioecious fig species (Ficus hispida and Ficus exasperata) in the Indian Western Ghats using co‐dominant nuclear microsatellite markers. We found high levels of microsatellite genetic diversity in both species. The regression slopes between genetic relationship coefficients (f_ij) and spatial distances were significantly negative in both species indicating that, on average, individuals in close spatial proximity were more likely to be related than individuals further apart. Mean parent–offspring distance (σ) calculated using these slopes was about 200 m in both species. This should be contrasted with the very long pollen dispersal distances documented for monoecious Ficus species. Nevertheless, overall population genetic diversity remained large suggesting immigrant gene flow. Further studies will be required to analyze broader scale patterns.     

Biogeographical network analysis of plant species distribution in the Mediterranean region

The delimitation of bioregions helps to understand historical and ecological drivers of species distribution. In this work, we performed a network analysis of the spatial distribution patterns of plants in south of France (Languedoc‐Roussillon and Provence‐Alpes‐Côte d'Azur) to analyze the biogeographical structure of the French Mediterranean flora at different scales. We used a network approach to identify and characterize biogeographical regions, based on a large database containing 2.5 million of geolocalized plant records corresponding to more than 3,500 plant species. This methodology is performed following five steps, from the biogeographical bipartite network construction to the identification of biogeographical regions under the form of spatial network communities, the analysis of their interactions, and the identification of clusters of plant species based on the species contribution to the biogeographical regions. First, we identified two sub‐networks that distinguish Mediterranean and temperate biota. Then, we separated eight statistically significant bioregions that present a complex spatial structure. Some of them are spatially well delimited and match with particular geological entities. On the other hand, fuzzy transitions arise between adjacent bioregions that share a common geological setting, but are spread along a climatic gradient. The proposed network approach illustrates the biogeographical structure of the flora in southern France and provides precise insights into the relationships between bioregions. This approach sheds light on ecological drivers shaping the distribution of Mediterranean biota: The interplay between a climatic gradient and geological substrate shapes biodiversity patterns. Finally, this work exemplifies why fragmented distributions are common in the Mediterranean region, isolating groups of species that share a similar eco‐evolutionary history.     

Expression patterns and association analysis of the porcine DHX58 gene

RIG-1 signalling is responsible for the detection of cytoplasmic viral RNA molecules. DEXH (Asp-Glu-X-His) box polypeptide 58 (encoded by DHX58) is a negative regulator of the RIG-1 signalling pathway. In human, the DHX58 gene can be upregulated and can inhibit the RIG-1 signalling pathway during viral infection. In this study, porcine DHX58 gene expression patterns were studied. According to our results, the porcine DHX58 gene was upregulated not only by the stimulation of Poly I:C but also by the stimulation of 1ipopolysaccharides (LPS). One polymorphism (g.4919G>C), detected in the ninth intron, was significantly associated with some blood parameters including the red cell distribution width of 1-day-old pigs and white blood cell counts, lymphocyte absolute counts, and platelet distribution width of 17-day-old pigs (P < 0.05). Moreover, the individuals with the genotype GG have a significantly higher mean white blood cell count than individuals with genotype CC or GC (P < 0.05). Our study indicates that DHX58 is an important gene that is associated with the immune response in swine.     

pathmatrix: a geographical information system tool to compute effective distances among samples

pathmatrix is a tool used to compute matrices of effective geographical distances among samples using a least‐cost path algorithm. This program is dedicated to the study of the role of the environment on the spatial genetic structure of populations. Punctual locations (e.g. individuals) or zones encompassing sample data points (e.g. demes) are used in conjunction with a species‐specific friction map representing the cost of movement through the landscape. Matrices of effective distances can then be exported to population genetic software to test, for example, for isolation by distance. pathmatrix is an extension to the geographical information system (GIS) software arcview 3.x.     

Some New Aspects of 2 × 2 Table Measures and Their Applications

The paper deals with the analysis of 2 × 2 table measures and describes several new possibilities for applying them. An estimate is given for HELLMICH's asymmetric K-measure and a possible extension of the contingency concept in a special 2×2 case is presented. The concept introduced and the recommended computer application of the 2×2 table measures is supported by new results obtained for the relationship between jaw joint pains and noises examined earlier by F. SCHMID and C. ZSCHEGE. With a larger number of observations the opportunity arises for a deeper analysis of this dental problem using path analysis. The plan of evaluation and the conncetion between the variables examined is illustrated by a path-diagram. The association tables determined on the basis of the (C) values introduced during the examination of jaw joint disturbances using association analysis draw attention to the special role of the left side of mastication. The paper raises ideas for further generalisations and indicates where further research is needed.     

Neural inhibition sharpens auditory spatial selectivity of bat inferior collicular neurons

This study examines the role of neural inhibition in auditory spatial selectivity of inferior collicular neurons of the big brown bat, Eptesicus fuscus, using a two-tone inhibition paradigm. Two-tone inhibition decreases auditory spatial response areas but increases the slopes of directional sensitivity curves of inferior collicular neurons. Inferior collicular neurons have either directionally-selective or hemifield directional sensitivity curves. A directionally-selective curve always has a peak which is at least 50% larger than the minimum. A hemifield directional sensitivity curve rises from an ipsilateral angle by more than 50% and either reaches a plateau or declines by less than 50% over a range of contralateral angles. Two-tone inhibition does not change directionally-selective curves but changes most hemifield directional sensitivity curves into directionally-selective curves. Auditory spatial selectivity determined both with and without two-tone inhibition increases with increasing best-excitatory frequency. Sharpening of auditory spatial selectivity by two-tone inhibition is larger for neurons with smaller differences between excitatory and inhibitory best frequencies. The effect of two-tone inhibition on auditory spatial selectivity increases with increasing inhibitory tone intensity but decreases with increasing intertone interval. The implications of these findings in bat echolocation are discussed. Accepted: 18 January 2000     

Spatial relations and population structure of a dominant tree along a treeline ecotone in the Tropical Andes: interactions at gradient and plant-neighbourhood scales

Background: Studies in temperate mountains suggest that plant–plant interactions modulate tree establishment above the forest line. In tropical mountains worldwide this issue remains largely unexplored.

Aims: To analyse the population structure and local spatial relationships of a dominant tree at a species-rich tropical Andean forest line.

Methods: We determined changes in the population structure of Diplostephium venezuelense along an elevation gradient between continuous forest and open páramo and analysed plant community structure and superficial rock cover in the neighbourhood of saplings and adults at the upper forest line.

Results: Sapling and adult densities were highest in low-altitude páramos adjacent to the forest line and at the borders of small forest islands. Saplings showed local spatial aggregation, were positively associated with small boulders and low shrubs, and negatively associated with mosses and lichens. However, no spatial association was found between scattered adults in the páramo and saplings of other forest trees.

Conclusions: Complex species-specific local spatial interactions, suggesting both facilitative and antagonistic effects, seem to modulate the establishment of the dominant tree D. venezuelense at and above the upper forest line. Nevertheless, the establishment of other tree species above continuous forests does not appear to be facilitated by the canopy cover offered by the isolated D. venezuelense individuals established in open páramo environments.     

Characteristics of the ichthyofaunas of southwestern Australian estuaries,including comparisons with holarctic estuaries and estuaries elsewhere in temperate Australia: A review

Data on the species compositions and the ages, sizes, reproductive biology, habitats and diets of the main species in the ichthyofaunas of seven estuaries in temperate southwestern Australia have been collated. Twenty-two species spawn in these estuaries, of which 21 complete their lifecycles in the estuary. The latter group, which includes several species of atherinids and gobies with short lifecycles, make far greater contributions to the total numbers of fish in the shallows of these estuaries than in those of holarctic estuaries, such as the Severn Estuary in the United Kingdom. This is presumably related in part to far less extreme tidal water movements and the maintenance of relatively high salinities during the dry summers, and thus to more favourable conditions for spawning and larval development. However, since estuaries in southwestern Australia have tended to become closed for periods, there would presumably also have been selection pressures in favour of any members of marine species that were able to spawn in an estuary when that estuary became landlocked. Furthermore, the deep saline waters, under the marked haloclines that form in certain regions during heavy freshwater discharge in winter, act as refugia for certain estuarine species. The contributions of estuarine-spawning species to total fish numbers in the shallows varied markedly from 33 or 34% in two permanently open estuaries to ≥ 95% in an intermittently open estuary, a seasonally closed estuary and a permanently open estuary on the south coast, in which recruitment of the 0 + age class of marine species was poor. The larger estuarine species can live for several years and reach total lengths of ~ 700 mm and some estuarine species move out into deeper waters as they increase in size. Several marine species use southwestern Australian estuaries as nursery areas for protracted periods. However, sudden, marked increases in freshwater discharge in winter and resultant precipitous declines in salinity in the shallows, and in other regions where haloclines are not formed, are frequently accompanied by rapid and pronounced changes in ichthyofaunal composition, partly due to the emigration of certain marine species. In contrast, the ichthyofaunal compositions of macrotidal holarctic estuaries undergo annual, cyclical changes, due largely to the sequential entry of the juveniles of different marine species for short periods. The ichthyofaunal compositions of the narrow entrance channels, wide basins and saline riverine reaches of large, permanently open southwestern Australian estuaries vary, reflecting the marked tendency for some species to be restricted mainly to one or two of these regions. Comparative data indicate that the characteristics determined for ichthyofaunas in southwestern Australian estuaries apply in general to estuaries elsewhere in temperate Australia.